<html>
<title>Define Replicas</title>
<body style="padding:20px;width:650px;">
<h3>Define replicate libraries</h3>

This table is editable. Just put your cursor in the cell you want to edit and
make the desired changes.
<p>
The table has three columns, "TransLib", "File Lib name", 
and "Real Lib name".
You will edit the third column to define the replicas. 
<p>
The table is pre-filled out using the library names which were found in your
expression count files. The three columns are as follows:
<p>
<b>TransLib:</b> The name of the transcript library that the expression count file
is associated to. 
<p>
<b>File Lib name:</b> This column lists the library identifiers (column headers)
 which were found in the Read Count File. Here, each replicate library will
 have a <i>unique</i> name, for example "MyLib1, MyLib2, MyLib3". 
 <p> 
 <b>Real Lib name:</b> This is the column which you edit to define the overall library 
 name for each replicate set. If your "File Lib names" are of the form name+number, as
 in the MyLib1, MyLib2, MyLib3 example, then the root name (e.g. MyLib) will be automatically
entered and you will not need to edit the name. Otherwise you will need to make
 up suitable library name(s) and edit the corresponding rows. <i>Make sure that these
 library names don't match any others that were already used.</i>
<p>
When the table is correct, press "Keep".
<p>
<i>Note:</i> if you are creating multiple singleTCW databases to compare with multiTCW, it
is extremely important that you use the exact same library name for equivalent libraries,
e.g. if you have a maize and rice database where they both have leaf and root, call them
the same thing so they will correspond in multiTCW.